Use science anywhere/everywhere you can, check in at all computers that you have access to. Shimli 13 and 14 affect Reputation 7. Turning down the Shopkeeper after he's been robbed if he asks for your help hauling goods gets a point. Picking money when a leader offers you a gift will get you a point. That's about it. There's one or two more one-shot bonuses, like from the IRIA Ruby plot and Biocorp basement.